Package index • aoh

Summary

Summary of the package

aoh aoh-package: aoh: Create Area of Habitat Data

Area of Habitat

Functions for working with Area of Habitat data

create_spp_info_data(): Create species' information data

create_spp_aoh_data(): Create Area of Habitat data

create_spp_frc_data(): Create fractional coverage data

calc_spp_frc_data(): Calculate fractional coverage data

plot_spp_aoh_data(): Plot species range and Area of Habitat data

plot_spp_frc_data(): Plot species range and fractional coverage data

Importing data

Functions for downloading and importing data

read_spp_range_data(): Read species range data

get_global_elevation_data(): Get global elevation data

get_jung_lvl1_habitat_data(): Get Jung et al. (2020) habitat classification data (level 1)

get_jung_lvl2_habitat_data(): Get Jung et al. (2020) habitat classification data (level 2)

get_jung_plvl1_habitat_data(): Get Jung (2020) potential habitat classification data (level 1)

get_lumb_cgls_habitat_data(): Get Lumbierres et al. (2021) CGLS habitat classification data

get_spp_habitat_data(): Get species habitat data

get_spp_summary_data(): Get species summary data

get_spp_threat_data(): Get species threat data

Crosswalk data

Crosswalks for IUCN habitat classification codes

crosswalk_jung_lvl1_data: Crosswalk data for Jung et al. (2020) (level 1 classification)

crosswalk_jung_lvl2_data: Crosswalk data for Jung et al. (2020) (level 2 classification)

crosswalk_jung_plvl1_data: Crosswalk data for Jung (2020) potential habitat classification (level 1)

crosswalk_lumb_cgls_data: Crosswalk data for CGLS based on Lumbierres et al. (2021)

IUCN classifications

Data and functions for querying classification codes

iucn_habitat_data: IUCN habitat classification codes

iucn_threat_data: IUCN threat classification codes

iucn_habitat_codes_artificial(): IUCN Red List codes for artificial habitats

iucn_habitat_codes_introduced(): IUCN Red List codes for introduced habitats

iucn_habitat_codes_marine(): IUCN Red List codes for marine habitats

iucn_habitat_codes_misc(): IUCN Red List codes for miscellaneous habitats

iucn_habitat_codes_terrestrial(): IUCN Red List codes for terrestrial habitats

Simulating data

Functions for simulating data

simulate_spp_data(): Simulate species data

External software

Functions to check if external software or services are available

is_gdal_calc_available(): Is gdal_calc.py available?

is_grass_available(): Is GRASS available?

is_iucn_rl_api_available(): Is IUCN Red List API available?

is_osgeo4w_available(): Is OSGeo4W available?

system_gdal_version(): System GDAL version

Miscellaneous functions

Assorted functions with various uses

terra_combine(): Combine rasters

terra_gdal_calc(): GDAL calculate

terra_gdal_crop(): Crop a raster using GDAL

terra_gdal_project(): Project a raster using GDAL

terra_gdal_rasterize(): Convert vector data into a raster using GDAL

st_repair_geometry(): Repair geometry