Simulated data

Simulated data for prioritizing conservations projects.

data(sim_project_data)

data(sim_action_data)

data(sim_species_data)

data(sim_tree)

Format

sim_project_data: tibble object.
sim_action_data: tibble object.
sim_species_data: tibble object.
sim_tree: phylo object.

Details

The data set contains the following objects:

sim_project_data

A tibble containing data for six simulated conservation projects. Each row corresponds to a different project and each column contains information about the projects. This table contains the following columns:

"name": character name for each project.
"success": numeric probability of each project succeeding if it is funded.
"S1" ... "S5": numeric columns for each species (i.e. "S1", "S2", "S3", "S4", "S5", indicating the enhanced probability that each species will survive if it funded.
"S1_action" ... "SN_action": logical columns for each action, ranging from "S1_action" to "SN_action" where N is the number of actions (equal to the number of species in this simulated data), indicating if an action is associated with a project (TRUE) or not (FALSE).

sim_action_data

A tibble containing data for six simulated actions. Each row corresponds to a different action and each column contains information about the actions. This table contains the following columns:

"name": character name for each action.
"cost": numeric cost for each action.
"locked_in": logical indicating if certain actions should be locked into the solution.
"locked_out": logical indicating if certain actions should be locked out of the solution.

sim_species_data

A tibble containing data for six simulated species. Each row corresponds to a different species and each column contains information about the species. This table contains the following columns:

"name": character name for each species.
"weight": numeric weight for each species.

tree

phylo phylogenetic tree for the species.

Examples

# load data
data(sim_project_data, sim_action_data, sim_species_data, sim_tree)

# print project data
print(sim_project_data)
#> # A tibble: 6 x 13
#>   name  success    S1    S2     S3    S4    S5 S1_action S2_action S3_action
#>   <chr>   <dbl> <dbl> <dbl>  <dbl> <dbl> <dbl> <lgl>     <lgl>     <lgl>    
#> 1 S1_p~   0.919 0.791 0     0      0     0     TRUE      FALSE     FALSE    
#> 2 S2_p~   0.923 0     0.888 0      0     0     FALSE     TRUE      FALSE    
#> 3 S3_p~   0.829 0     0     0.502  0     0     FALSE     FALSE     TRUE     
#> 4 S4_p~   0.848 0     0     0      0.690 0     FALSE     FALSE     FALSE    
#> 5 S5_p~   0.814 0     0     0      0     0.617 FALSE     FALSE     FALSE    
#> 6 base~   1     0.298 0.250 0.0865 0.249 0.182 FALSE     FALSE     FALSE    
#> # ... with 3 more variables: S4_action <lgl>, S5_action <lgl>,
#> #   baseline_action <lgl>
# print action data
print(sim_action_data)
#> # A tibble: 6 x 4
#>   name             cost locked_in locked_out
#>   <chr>           <dbl> <lgl>     <lgl>     
#> 1 S1_action        94.4 FALSE     FALSE     
#> 2 S2_action       101.  FALSE     FALSE     
#> 3 S3_action       103.  TRUE      FALSE     
#> 4 S4_action        99.2 FALSE     FALSE     
#> 5 S5_action        99.9 FALSE     TRUE      
#> 6 baseline_action   0   FALSE     FALSE     

# print species data
print(sim_species_data)
#> # A tibble: 5 x 2
#>   name  weight
#>   <chr>  <dbl>
#> 1 S3     0.211
#> 2 S1     0.211
#> 3 S5     0.221
#> 4 S2     0.630
#> 5 S4     1.59 
# print phylogenetic tree
print(sim_tree)
#> 
#> Phylogenetic tree with 5 tips and 4 internal nodes.
#> 
#> Tip labels:
#> [1] "S3" "S1" "S5" "S2" "S4"
#> 
#> Rooted; includes branch lengths.

# plot phylogenetic tree
plot(sim_tree)

Format

Details

Examples

Contents